DAWG pipeline

DAWG specifications

Information


Unique identifier OMICS_19895
Name DAWG
Alternative name DNA Assembly with Gaps
Software type Application/Script
Interface Command line interface
Restrictions to use None
Output data Genotype or Sequence, Individual Relationship.
Output format FASTA, FASTQ, PHYLIP, NEXUS, CLUSTAL
Operating system Unix/Linux, Mac OS, Windows
Programming languages C, C++, Perl
Computer skills Advanced
Version 1.2
Stability Stable
Maintained No

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Additional information


https://popmodels.cancercontrol.cancer.gov/gsr/packages/dawg/

Publication for DNA Assembly with Gaps

DAWG IN pipelines

 (2)
2010
PMCID: 2823711
PMID: 20102627
DOI: 10.1186/1471-2105-11-54

[…] their manually curated alignments from databases such as homstrad [15], balibase [16], and sabmark [17], or (ii) to simulate the evolution of biological sequences by using specialized tools such as dawg [18], rose [19] and indelible [20]. the main advantage of the former approach is the use of real biological sequences and alignments that are produced by using protein structure information. […]

2010
PMCID: 2851118
PMID: 20808525
DOI: 10.2174/138920210790218007

[…] the effectiveness of annotation and assembly tools [12]. some of these methods have been based on simulating the phylogenies under more or less complex models of dna sequence evolution, for example dawg [15] allows for the inclusion of indels the same as simgenome [12], which also includes integrated parameter estimation. evolsimulator [16] is also phylogenetic based model, which evolves […]

DAWG institution(s)
Department of Genetics, University of Georgia, Athens, GA, USA
DAWG funding source(s)
Supported by an NSF Predoctoral Fellowship and NIH Grant 5R01 GM48528-06.

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