DAWGPAWS statistics

info info

Citations per year

info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Transposable element prediction chevron_right
Want to access the full stats & trends on this tool?

DAWGPAWS specifications

Information


Unique identifier OMICS_09443
Name DAWGPAWS
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.1
Stability Beta
Requirements
BioPerl
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline James C. Estill

Publication for DAWGPAWS

DAWGPAWS citations

 (2)
library_books

A physical map for the Amborella trichopoda genome sheds light on the evolution of angiosperm genome structure

2011
Genome Biol
PMCID: 3219971
PMID: 21619600
DOI: 10.1186/gb-2011-12-5-r48

[…] escribed []. Phase II BAC sequences were then assembled into 1003 and 431 contig sequences based on dot plot comparisons and overlap similarity between adjacent clones.Perl scripts available from the DAWGPAWS package [,] were used to convert computational annotation results from multiple sources into a single GFF3 file for combined evidence annotation in Apollo [] and publication in Gbrowse []. Ab […]

library_books

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy

2010
BMC Plant Biol
PMCID: 3095328
PMID: 21073723
DOI: 10.1186/1471-2229-10-246

[…] leotides), 16 bp (tetranucleotides), 20 bp (pentanucleotides) and 24 bp (hexanucleotides).Transposons were annotated using Ab initio and sequence similarity searches integrated in a pipeline based on Dawgpaws []. The programs used for de novo prediction of LTR retrotransposons included LTR_STRUC [], LTR_finder [] and LTR_seq [], and vary in the type of structures they look for, their stringency an […]


Want to access the full list of citations?
DAWGPAWS institution(s)
Department of Plant Biology, The University of Georgia, Athens, GA, USA; Department of Genetics, The University of Georgia, Athens, GA, USA

DAWGPAWS reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DAWGPAWS