DB2 specifications

Information


Unique identifier OMICS_14829
Name DB2
Alternative name Distribution Based detection of Duplication Boundaries
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The mapping of the paired-end read sequences to the reference genome.
Input format BAM
Output data The resulting BAM files with orientation information as well as the mapping coordinates for each read pair.
Output format BAM
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Stability Stable
Requirements Picard SAM-JDK
Maintained Yes

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Maintainer


  • person_outline Thomas LaFramboise <>

Publication for Distribution Based detection of Duplication Boundaries

DB2 institution(s)
Department of Epidemiology & Biostatistics, Case Western Reserve University, Cleveland, OH, USA; Department of Electrical Engineering & Computer Science, Case Western Reserve University, Cleveland, OH, USA; Department of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH, USA; Center for Proteomics and Bioinformatics, Case Western Reserve University, Cleveland, OH, USA; Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, USA
DB2 funding source(s)
This work was supported by the National Cancer Institute of the National Institutes of Health under Awards R25-CA094186, R01-CA131341, the National Science Foundation under Award IIS-0916102, and the American Cancer Society under award 123436-RSG-12-159-01-DMC.

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