DBDigger specifications

Information


Unique identifier OMICS_28487
Name DBDigger
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Maintainer


  • person_outline David Tabb

Publication for DBDigger

DBDigger citation

library_books

The Protein Network Surrounding the Human Telomere Repeat Binding Factors TRF1, TRF2, and POT1

2010
PLoS One
PMCID: 2928292
PMID: 20811636
DOI: 10.1371/journal.pone.0012407

[…] ese replicates had an exposure to sham- and ionizing radiation prior to cell lysis. The tandem mass spectra for each sample were then searched against the human IPI protein database version 3.25 with DBDigger. The identified proteins in each sample were filtered to eliminate “the contaminants” presented in 293T-REx cells expressing vector alone, and then sorted by DTASelect and listed in . Compari […]

DBDigger institution(s)
Life Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA; Genome Science and Technology, UT-ORNL Graduate School, Oak Ridge, TN, USA; Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, USA
DBDigger funding source(s)
Supported by the United States Department of Energy’s Office of Biological and Environmental Sciences through the Genomics: GTL Center for Molecular and Cellular Systems.

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