DBG2OLC specifications

Unique identifier:
OMICS_13517
Software type:
Pipeline/Workflow
Restrictions to use:
None
Input format:
FASTQ, FASTA, TXT
Biological technology:
Illumina, Pacific Biosciences
Programming languages:
C++
Stability:
Stable
Name:
DBG2OLC
Interface:
Command line interface
Input data:
Long reads from Illumina or PacBio, Consensus information, DBG contigs
Output data:
An overlap graph, the draft assembly
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

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DBG2OLC distribution

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DBG2OLC support

Documentation

Maintainer

  • Chengxi Ye <>

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Publications

Institution(s)

Department of Computer Science, Institute for Advanced Computer Studies, University of Maryland, College Park, MD, USA; Computational Biology and Medical Ecology Lab, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China; Agricultural Genome Institute, Chinese Academy of Agricultural Sciences, Dapeng New District, Shenzhen, Guangdong, China

Funding source(s)

This research received funding from the following sources: National Science Foundation of China (Grants No. 61175071, 71473243), the Exceptional Scientists Program and Top Oversea Scholars Program of Yunnan Province, and Yunling Industrial Innovation Grant.

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