DBG2OLC specifications

Information


Unique identifier OMICS_13517
Name DBG2OLC
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input data Long reads from Illumina or PacBio, Consensus information, DBG contigs
Input format FASTQ, FASTA, TXT
Output data An overlap graph, the draft assembly
Biological technology Illumina, Pacific Biosciences
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Documentation


Maintainer


  • person_outline Chengxi Ye <>

Publication for DBG2OLC

DBG2OLC institution(s)
Department of Computer Science, Institute for Advanced Computer Studies, University of Maryland, College Park, MD, USA; Computational Biology and Medical Ecology Lab, State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, China; Agricultural Genome Institute, Chinese Academy of Agricultural Sciences, Dapeng New District, Shenzhen, Guangdong, China
DBG2OLC funding source(s)
This research received funding from the following sources: National Science Foundation of China (Grants No. 61175071, 71473243), the Exceptional Scientists Program and Top Oversea Scholars Program of Yunnan Province, and Yunling Industrial Innovation Grant.

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