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DBS-PRED specifications


Unique identifier OMICS_08387
Interface Web user interface
Restrictions to use None
Input data Protein sequence in a single letter code
Computer skills Basic
Stability Stable
Maintained Yes

Publication for DBS-PRED

DBS-PRED citations


A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639

[…] biased prediction by the programs. finally, different criteria are measured to show different aspects of the programs. the webservers assessed include bindn[], bindn+[], rnabindr[], rnabindrplus[], dbs-pred[], dbs-pssm[], kyg[], prbr[], pprint[], dnabindprot[], protedna[], displar[], dr_bind1[], aarna[], rbscore[], rbrdetector[], dnabind[], xypan[] and rnaprosite (lilab.ecust.edu.cn/nabind/), […]


Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins

PMCID: 3763535
PMID: 23788679
DOI: 10.1093/nar/gkt544

[…] the binding sites in dna-binding proteins from amino acid sequence, which have either online services or available standalone programs (). the methods are bindn (), bindn+ (), bindn-rf (), dbs-pred (), dbs-pssm (), dnabindr (), dp-bind with three categories, binary, blosum and pssm encoding (), metadbsite () and naps (). the details about the name, features, technique, reference […]


Characterization of Intrinsically Disordered Prostate Associated Gene (PAGE5) at Single Residue Resolution by NMR Spectroscopy

PMCID: 3206799
PMID: 22073178
DOI: 10.1371/journal.pone.0026633

[…] extended conformations establishing potential interaction modules, not necessarily all these regions correspond to binding epitopes or morfs. dna binding features of page5 were predicted using the dbs-pred software package, which predicted probability of page5 to bind dna is 86%. this, as well as experimental data on homologous page4 protein led us to study plausible dna binding of page5. […]


Involvement of C4 Protein of Beet Severe Curly Top Virus (Family Geminiviridae) in Virus Movement

PMCID: 2892029
PMID: 20585583
DOI: 10.1371/journal.pone.0011280

[…] but its ability to bind ss and/or dsdna was to be evaluated so far. by bioinformatic analysis, the probability of c4 protein binding to dna predicted by sequence analysis (http://www.netasa.org/dbs-pred/) was 95.8%. thus, the protein-dna binding assay was performed using linear monomer of bsctv genomic dna excised from the plasmid pcambia-1300-bsctv. the c4 protein was fused to the gst tag, […]

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DBS-PRED institution(s)
Department of Biochemical Science and Engineering, Kyushu Institute of Technology, Fukuoka, Iizuka, Japan

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