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|Interface||Web user interface|
|Restrictions to use||None|
|Input data||Protein sequence in a single letter code|
Publication for DBS-PSSM
A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs
[…] d with default parameters, while removing 95% sequence identity in RNABindRPlus. KYG was predicted with command line using “method_type = 8” option. RBscore_SVM was based on the training set of R246. DBS-PSSM, DBS-Pred, RBRIdent, PPRInt, PRBR, DNABind, RBRDetector and ProteDNA were used with default parameter. The DISPLAR program was provided by Sanbo Qin and was run with default parameters. BindN […]
Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins
[…] e binding sites in DNA-binding proteins from amino acid sequence, which have either online services or available standalone programs (). The methods are BindN (), BindN+ (), BindN-RF (), DBS-Pred (), DBS-PSSM (), DNABindR (), DP-Bind with three categories, binary, BLOSUM and PSSM encoding (), metaDBSite () and NAPS (). The details about the name, features, technique, reference and link for the met […]
SVM based model generation for binding site prediction on helix turn helix motif type of transcription factors in eukaryotes
[…] tion tool for HTH motif type of interaction studies. In view of the previous knowledge , four web servers are available at the moment for sequence-based prediction of DNA-binding sites: DBSPRED , DBS-PSSM , BindN  and DP-Bind .Our performance measures are higher than those reported by these four studies. […]
Characterization and prediction of the binding site in DNA binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters
[…] comparable to ours, though our method appears to be more sensitive. This method also outperforms the available sequence-based prediction methods of DNA-binding sites, such as DP-Bind (), DBSpred (), DBS-PSSM () and BindN () in terms of their reported accuracy, sensitivity and specificity. A very recent method, metaDBSite that integrated results from other web-servers including a few of those ment […]
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