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DBS-PSSM specifications

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Unique identifier OMICS_08388
Name DBS-PSSM
Interface Web user interface
Restrictions to use None
Input data Protein sequence in a single letter code
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Publication for DBS-PSSM

DBS-PSSM citations

 (3)
library_books

A Large Scale Assessment of Nucleic Acids Binding Site Prediction Programs

2015
PLoS Comput Biol
PMCID: 4683125
PMID: 26681179
DOI: 10.1371/journal.pcbi.1004639

[…] by the programs. finally, different criteria are measured to show different aspects of the programs. the webservers assessed include bindn[], bindn+[], rnabindr[], rnabindrplus[], dbs-pred[], dbs-pssm[], kyg[], prbr[], pprint[], dnabindprot[], protedna[], displar[], dr_bind1[], aarna[], rbscore[], rbrdetector[], dnabind[], xypan[] and rnaprosite (lilab.ecust.edu.cn/nabind/), […]

library_books

Novel approach for selecting the best predictor for identifying the binding sites in DNA binding proteins

2013
Nucleic Acids Res
PMCID: 3763535
PMID: 23788679
DOI: 10.1093/nar/gkt544

[…] binding sites in dna-binding proteins from amino acid sequence, which have either online services or available standalone programs (). the methods are bindn (), bindn+ (), bindn-rf (), dbs-pred (), dbs-pssm (), dnabindr (), dp-bind with three categories, binary, blosum and pssm encoding (), metadbsite () and naps (). the details about the name, features, technique, reference and link […]

library_books

SVM based model generation for binding site prediction on helix turn helix motif type of transcription factors in eukaryotes

2013
Bioinformation
PMCID: 3705624
PMID: 23861565
DOI: 10.6026/97320630009500

[…] tool for hth motif type of interaction studies. in view of the previous knowledge [], four web servers are available at the moment for sequence-based prediction of dna-binding sites: dbspred [], dbs-pssm [], bindn [] and dp-bind [].our performance measures are higher than those reported by these four studies., in this work, we have described a new svm-based approach for prediction […]


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DBS-PSSM institution(s)
Department of Bioinformatics and Bioscience, Kyushu Institute of Technology, Iizuka, Fukuoka, Japan

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