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dbSMR specifications

Information


Unique identifier OMICS_11156
Name dbSMR
Restrictions to use None
Data access Browse
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publication for dbSMR

dbSMR citations

 (4)
library_books

BsmR degrades c di GMP to modulate biofilm formation of nosocomial pathogen Stenotrophomonas maltophilia

2017
Sci Rep
PMCID: 5498567
PMID: 28680041
DOI: 10.1038/s41598-017-04763-w

[…] antity of the sequencing run. (ii) The average and distribution of GC content of both samples were less than 60%, which would not induce biases in the quantification. (iii) 85.84% and 78.28% reads of ΔbsmR-OXbsmR and WT-pBBR1MCS2, respectively, were mapped to the gene sequences of S. maltophilia ATCC 13637, suggesting good quanlities of the samples. (iv) No significant decrease of the coverage fro […]

library_books

Novel Insights into miRNA in Lung and Heart Inflammatory Diseases

2014
PMCID: 4058468
PMID: 24991086
DOI: 10.1155/2014/259131

[…] was associated with a significantly increased susceptibility (p = 6.81 × 10−6) and increased mature miR-196a expression (P = 0.001) []. Few databases for miRNA-related genetic variants are Patrocles, dbSMR, PolymiRTS, MicroSNiPer, miRdSNP, and dPORE-miRNA [].These studies suggest the potentiality of genetic variant in disease susceptibility. In future, the allelic variant with low disease suscepti […]

call_split

CRY2 Genetic Variants Associate with Dysthymia

2013
PLoS One
PMCID: 3738504
PMID: 23951166
DOI: 10.1371/journal.pone.0071450
call_split See protocol

[…] y functional variants, as many as possible, were included in the genotyping multiplexes. These 21 additional SNPs (8 for CRY2, 11 for CRY1 and 2 for TTC1) were selected using Pupasuite , Variowatch , dbSMR and miRNASNP databases. presents all the 48 SNPs that were successfully genotyped in this study and their selection criteria. […]

library_books

Illuminating microRNA Transcription from the Epigenome

2013
Curr Genomics
PMCID: 3580781
PMID: 23997652
DOI: 10.2174/138920213804999183

[…] elated GVs will be implicated in complex disease etiology.Several databases and web servers have been developed to facilitate data mining of GVs in miRNA-related genomic regions, including Patrocles, dbSMR, PolymiRTS, MicroSNiPer, miRdSNP, and dPORE-miRNA (see “Resource List”). […]

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dbSMR institution(s)
G N Ramachandran Knowledge Center for Genome Informatics, Institute of Genomics and Integrative Biology (CSIR), Mall Road, Delhi, India
dbSMR funding source(s)
This work was supported by funding from Council of Scientific and Industrial Research (CSIR), India through project NWP0036 and Senior Research Fellowship by CSIR.

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