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Publications for dbSNO
Features of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons
[…] (890 instances, and 353 instances), for a total of 1552. Filtering UniProt S-nitrosocysteine modifications for human leaves just 60 proteins, so that an alternative was sought. From the October 2016 dbSNO, 4165 cysteine nitrosylation sites were retrieved.Removing redundancy and requiring that windows of 21 amino acid length could be centred at each site, and which therefore excluded protein termi […]
BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery
[…] KB feature (FT) lines (see for a list of all FT entities used in functional annotations). Additional sources of functional annotations include: CDD (), SysPTM 1.1 (), PhosphoSite (), Phospho.ELM (), dbSNO 1.0 (), HPRD 9.0 () and OGlycBase6.0 ().Finally, all variation entries were unified to Disease Ontology or DO () terms to facilitate better cancer classification and easier database searching. S […]
Protein S nitrosylation: specificity and identification strategies in plants
[…] for screening the Cys residue of interest. They are freely accessible: GPS-SNO (http://sno.biocuckoo.org/, Xue et al., ), SNOSite (http://csb.cse.yzu.edu.tw/SNOSite/, Lee et al., ), dbSNO 2.0 (http://dbSNO.mbc.nctu.edu.tw, Lee et al., ; Chen et al., ), iSNO-PseAAC (http://app.aporc.org/iSNO-PseAAC/, Xu et al., ), PSNO (http://188.8.131.52:8088/PSNO/, Zhang et al., ). Recently, Huang et al. () pro […]
Human germline and pan cancer variomes and their distinct functional profiles
[…] publicly available databases and generates a data set containing only experimentally verified entries, which include data from UniProtKB/Swiss-Prot, Phospho.ELM (), PhosphoSitePlus (), O-GLYCBASE (), dbSNO (), SysPTM () and HPRD (). However, heterogeneity issues still left unresolved include (i) annotations are not mapped to a unified proteome reference and (ii) naming of PTMs is not standardized. […]
Nitric oxide based protein modification: formation and site specificity of protein S nitrosylation
[…] onal analyses, including the motifs of substrate sites, solvent accessibility, protein secondary and tertiary structures, protein domains, and gene ontology. The dbSNO is freely accessible via http://dbSNO.mbc.nctu.edu.tw. Another database named SNObase released nearly at the same time has collected S-nitrosylation targets extracted from the literature up to June 1, 2012 (). SNObase contains 2561 […]
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