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dbSNO specifications

Information


Unique identifier OMICS_04179
Name dbSNO
Restrictions to use None
Version 2.0
Maintained Yes

Publications for dbSNO

dbSNO citations

 (5)
library_books

Features of reactive cysteines discovered through computation: from kinase inhibition to enrichment around protein degrons

2017
Sci Rep
PMCID: 5703995
PMID: 29180682
DOI: 10.1038/s41598-017-15997-z

[…] (890 instances, and 353 instances), for a total of 1552. Filtering UniProt S-nitrosocysteine modifications for human leaves just 60 proteins, so that an alternative was sought. From the October 2016 dbSNO, 4165 cysteine nitrosylation sites were retrieved.Removing redundancy and requiring that windows of 21 amino acid length could be centred at each site, and which therefore excluded protein termi […]

library_books

BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery

2017
Nucleic Acids Res
PMCID: 5753215
DOI: 10.1093/nar/gkx907

[…] KB feature (FT) lines (see for a list of all FT entities used in functional annotations). Additional sources of functional annotations include: CDD (), SysPTM 1.1 (), PhosphoSite (), Phospho.ELM (), dbSNO 1.0 (), HPRD 9.0 () and OGlycBase6.0 ().Finally, all variation entries were unified to Disease Ontology or DO () terms to facilitate better cancer classification and easier database searching. S […]

library_books

Protein S nitrosylation: specificity and identification strategies in plants

2015
PMCID: 4285867
PMID: 25750911
DOI: 10.3389/fchem.2014.00114

[…] for screening the Cys residue of interest. They are freely accessible: GPS-SNO (http://sno.biocuckoo.org/, Xue et al., ), SNOSite (http://csb.cse.yzu.edu.tw/SNOSite/, Lee et al., ), dbSNO 2.0 (http://dbSNO.mbc.nctu.edu.tw, Lee et al., ; Chen et al., ), iSNO-PseAAC (http://app.aporc.org/iSNO-PseAAC/, Xu et al., ), PSNO (http://59.73.198.144:8088/PSNO/, Zhang et al., ). Recently, Huang et al. () pro […]

library_books

Human germline and pan cancer variomes and their distinct functional profiles

2014
Nucleic Acids Res
PMCID: 4191387
PMID: 25232094
DOI: 10.1093/nar/gku772

[…] publicly available databases and generates a data set containing only experimentally verified entries, which include data from UniProtKB/Swiss-Prot, Phospho.ELM (), PhosphoSitePlus (), O-GLYCBASE (), dbSNO (), SysPTM () and HPRD (). However, heterogeneity issues still left unresolved include (i) annotations are not mapped to a unified proteome reference and (ii) naming of PTMs is not standardized. […]

library_books

Nitric oxide based protein modification: formation and site specificity of protein S nitrosylation

2013
Front Plant Sci
PMCID: 3653056
PMID: 23717319
DOI: 10.3389/fpls.2013.00137

[…] onal analyses, including the motifs of substrate sites, solvent accessibility, protein secondary and tertiary structures, protein domains, and gene ontology. The dbSNO is freely accessible via http://dbSNO.mbc.nctu.edu.tw. Another database named SNObase released nearly at the same time has collected S-nitrosylation targets extracted from the literature up to June 1, 2012 (). SNObase contains 2561 […]

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dbSNO institution(s)
Institute of Chemistry, Academia Sinica, Taipei, Taiwan; Department of Computer Science and Engineering, Yuan Ze University, Taoyuan, Taiwan

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