Dataset features

Specifications


Application: Gene expression microarray analysis
Number of samples: 22
Release date: Oct 1 2013
Last update date: Oct 2 2013
Access: Public
Diseases: Neoplasms
Chemicals: Benzo(a)pyrene, Dimethyl Sulfoxide, Polycyclic Aromatic Hydrocarbons
Dataset link Effect of waterborne exposure to carcinogenic PAHs on adult zebrafish hepatic transcriptome

Experimental Protocol


Zebrafish were waterborne exposed to 0.3ppm BaP or DMBA for 1 and 2 weeks. After 1 and 2 weeks hepatic samples were collected from each treatment group as well as from the control group. 3 biological replicates have been collected per exposure group and time point. Each biological replicate is a pool of 5 livers. Samples from the different treatments were hybridized in an n+2 (n = 9) A-optimal loop design. Additionally, these two designs were linked by two extra hybridizations to enable comparison between time points

Repositories


GEO

GSE43675

ArrayExpress

E-GEOD-43675

BioProject

PRJNA187042

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Contact


Unai Vicario