DCA specifications

Information


Unique identifier OMICS_13941
Name DCA
Alternative names Direct-Coupling Analysis, Direct Coupling Analysis
Interface Web user interface
Restrictions to use Academic or non-commercial use
Input data A protein multiple sequence alignments (MSA)
Input format FASTA
Output data A direct information file with all the possible residue-residue pairing in the MSA
Programming languages MATLAB
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Publication for Direct-Coupling Analysis

DCA institution(s)
Center for Theoretical Biological Physics, University of California at San Diego, La Jolla, CA, USA; Human Genetics Foundation, Turin, Italy; Institute for Scientific Interchange, Turin, Italy; Department of Systems Biology, Harvard Medical School, Boston, MA, USA; Memorial Sloan–Kettering Cancer Center, Computational Biology Center, New York, NY, USA; Center for Computational Studies and Dipartimento di Fisica, Politecnico di Torino, Turin, Italy; Center for Theoretical Biological Physics, Rice University, Houston, TX, USA; Laboratoire de Génomique des Microorganismes, Unité Mixte de Recherche 7238, Université Pierre et Marie Curie, Paris, France
DCA funding source(s)
This work was supported by a European Commission Grant 267915, the Center for Theoretical Biological Physics sponsored by the National Science Foundation (NSF Grant PHY-0822283), and by NSF Grant MCB-1051438.

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