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DCBLAST

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Performs run on grid system with query splicing which can run National Center for Biotechnology Information (NCBI) BLASTBLAST search comparisons. DCBLAST uses BLAST job that dramatically accelerates the execution of BLAST query searches using a simple, accessible, robust, and practical approach. The comparisons could be run over within the cluster, grid, and cloud computing grid environment by using a query sequence distribution approach NCBI BLAST.

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DCBLAST classification

  • Animals
  • Plants

DCBLAST specifications

Software type:
Package/Module
Restrictions to use:
None
Programming languages:
Perl
Computer skills:
Advanced
Requirements:
NCBI-BLAST+, Sun Grid Engine, Grid cloud, Path::Tiny, Data::Dumper, Config::Tiny
Interface:
Command line interface
Operating system:
Unix/Linux
Parallelization:
Other
Stability:
Stable
Maintained:
Yes

DCBLAST distribution

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Credits

Institution(s)

University of Nevada - Reno

Link to literature

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