Dataset features

Specifications


Application: RNA-seq analysis, sRNA-seq analysis
Number of samples: 4
Release date: Jun 10 2015
Last update date: Oct 10 2018
Access: Public
Computational protocol: UCSC Genome Browser, Bowtie, BEDTools, RepeatMasker, miRBase
Dataset link Somatic piRNAs in the adult mouse

Experimental Protocol


We deep sequenced small RNAs from the liver and spleen of one WT mouse and one MIWI2 knock-out mouse. We then trimmed sequencing adapters and removed known ncRNAs (rRNA, tRNA, snoRNA, snRNA, miRNA) from the dataset before aligning reads to the mm9 assembly of the mouse genome.

Repositories


GEO

GSE47093

ArrayExpress

E-GEOD-47093

ENA

SRP022904

BioProject

PRJNA203543

Download


Contact


Dario Boffelli

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