DCGL pipeline

DCGL specifications

Information


Unique identifier OMICS_12492
Name DCGL
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Version 2.1.2
Stability No
Source code URL https://cran.r-project.org/web/packages/DCGL/index.html
Maintained No

Versioning


Add your version

Documentation


Maintainer


This tool is not available anymore.

Publications for DCGL

DCGL IN pipelines

 (2)
2018
PMCID: 5818881
PMID: 29497423
DOI: 10.3389/fimmu.2018.00249

[…] signals and to lower the barrier for correction of multiple testing; these probes were filtered out using the median-based method as implemented in the function “expressionbasedfilter” from the r dcgl package (21). additionally, genes that did not show significant variations (p-value < 0.05) across the samples were filtered using the function “variancebasedfilter” in the same package. […]

2016
PMCID: 4861001
PMID: 27217777
DOI: 10.2147/OTT.S92350

[…] based on differential coexpression profile and differential coexpression enrichment methods, followed by dcsum function to summarize the final set of dcgs and links. in addition, drrank function in dcgl package, a novel module in dcgl v2.0, was also utilized to identify the transcription factors that significantly regulate the dcgs according to the targets enrichment density (ted) and targets […]

DCGL institution(s)
Department of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, TN, USA; Departments of Psychiatry, Vanderbilt University School of Medicine, Nashville, TN, USA; Department of Cancer Biology, Vanderbilt University School of Medicine, Nashville, TN, USA; Bioinformatics Center, Key Laboratory of Systems Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai, China; School of Biotechnology, East China University of Science and Technology, Shanghai, China; Shanghai Center for Bioinformation Technology, Shanghai Industrial Technology Institute, Shanghai, China

DCGL reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DCGL