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dcGO specifications

Information


Unique identifier OMICS_05088
Name dcGO
Restrictions to use None
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/DcGO

Publication for dcGO

dcGO citations

 (9)
library_books

Interactions Among Host–Parasite MicroRNAs During Nosema ceranae Proliferation in Apis mellifera

2018
Front Microbiol
PMCID: 5902570
PMID: 29692768
DOI: 10.3389/fmicb.2018.00698

[…] mRNAs was performed again with WGCNA package. Transcriptome sequences were downloaded from NCBI bio-project PRJNA399493. The protein sequences of candidate genes were used to query the Pfam, UniProt, dcGO, and KEGG databases, to retrieve putative functions and involved pathways. […]

library_books

Root morphogenic pathways in Eucalyptus grandis are modified by the activity of protein arginine methyltransferases

2017
BMC Plant Biol
PMCID: 5345158
PMID: 28279165
DOI: 10.1186/s12870-017-1010-x

[…] o determine the statistical significance of gene expression. To identify functional domains that were significantly enriched, PFAM annotation of the differentially regulated genes was analyzed by the dcGO program http://supfam.org/SUPERFAMILY/cgi-bin/dcenrichment.cgi (accessed December 2015). Only FDR-corrected of PFAM slim ‘specific’ and ‘highly specific’ annotations with p-values < 0.001 were as […]

library_books

The mRNA bound proteome of the human malaria parasite Plasmodium falciparum

2016
Genome Biol
PMCID: 4933991
PMID: 27381095
DOI: 10.1186/s13059-016-1014-0

[…] es). A heatmap of clustered Pfam domain abundance was generated using the pheatmap package in R v2.7.0. Domain-centric GO analysis of Pfam domain clusters was performed using the web-based version of dcGO (http://supfam.org/SUPERFAMILY/cgi-bin/dcenrichment.cgi) [], with a collapsed subset of GO terms and a false discovery rate (FDR) <0.01. […]

library_books

Schistosoma mansoni Egg, Adult Male and Female Comparative Gene Expression Analysis and Identification of Novel Genes by RNA Seq

2015
PLoS Negl Trop Dis
PMCID: 4699917
PMID: 26719891
DOI: 10.1371/journal.pntd.0004334

[…] ding Potential Calculator (CPC) [] to assess the protein-coding potential of these transcripts. Contigs with a Pfam conserved domain were clustered into categories using domain-centric Gene Ontology (dcGO) [] and the online tool CateGOrizer (http://www.animalgenome.org/tools/catego/) with the GO_slim2 option. […]

library_books

Function selective domain architecture plasticity potentials in eukaryotic genome evolution

2015
Biochimie
PMCID: 4679076
PMID: 25980317
DOI: 10.1016/j.biochi.2015.05.003

[…] hat overlooked area of research is the need for functional annotations of protein domains (even though their importance as functional units has been widely recognised). Recently, we have released the dcGO database , together with open-source software ‘dcGOR’ , providing a systematic annotation of domains using a panel of ontologies including Gene Ontology (GO) and expanding our sparse manual funct […]

library_books

Functional prediction of hypothetical proteins in human adenoviruses

2015
Bioinformation
PMCID: 4658645
PMID: 26664031
DOI: 10.6026/97320630011466

[…] to several sequence-based protein function prediction servers. These were PFP [] (Protein Function Prediction), ESG [] (Extended Similarity Group), ARGOT2 [], BAR+ [], PSIPRED [], ProtFun [], and dcGO []. The hypothetical proteins were also submitted to the fold recognition server Phyre2 [] in order to determine the fold of these proteins. Protein domain prediction was performed using the prot […]

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dcGO institution(s)
Department of Computer Science, University of Bristol, The Merchant Venturers Building, Bristol, UK

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