dcGOR statistics

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dcGOR specifications

Information


Unique identifier OMICS_06133
Name dcGOR
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained No

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Publication for dcGOR

dcGOR in publications

 (2)
PMCID: 5656839
PMID: 28815929
DOI: 10.1002/humu.23313

[…] a position (msa coverage) was determined based on the number of gaps with respect to the pfam domain., gene ontology biological process (gobp) enrichment analysis was performed using the r package dcgor 1.0.6 (fang, )., we use the non‐synonymous over synonymous ratio, or dn/ds score, to quantify genetic tolerance in genes and domains. in our setting, this score is based on the single […]

PMCID: 4679076
PMID: 25980317
DOI: 10.1016/j.biochi.2015.05.003

[…] annotations of protein domains (even though their importance as functional units has been widely recognised). recently, we have released the dcgo database , together with open-source software ‘dcgor’ , providing a systematic annotation of domains using a panel of ontologies including gene ontology (go) and expanding our sparse manual functional annotations . this resource has been assessed […]


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dcGOR institution(s)
Computational Genomics Group, Department of Computer Science, University of Bristol, Bristol, UK

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