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DNA-Chip Analyzer dChip

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Allows analysis of Affymetrix gene expression microarrays and single nucleotide polymorphism (SNP) microarrays. dChip is a microarray analysis software accessible to both biologists and data analysts through a friendly user interface. At the probe level, the model-based approach allows pooling information across multiple arrays and automatic probe selection to handle cross-hybridization and image contamination. High-level analysis in dChip includes comparing samples, hierarchical clustering, loss of heterozygosity (LOH) and copy number analysis of SNP arrays.

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dChip forum

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dChip classification

dChip specifications

Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Medium
Maintained:
Yes
Interface:
Graphical user interface
Operating system:
Windows
Stability:
Stable

dChip distribution

versioning

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dChip support

Documentation

Maintainer

  • Cheng Li <>

Additional information

https://sites.google.com/site/dchipsoft/tutorials-and-courses

Credits

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Publications

Institution(s)

Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Boston, MA, USA

Funding source(s)

Supported by NIH grant 1R01GM077122

Link to literature

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