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Associated diseases

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Dcluster specifications

Information


Unique identifier OMICS_06106
Name Dcluster
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Operating system Unix/Linux
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for Dcluster

Dcluster in publications

 (13)
PMCID: 5923024
PMID: 29703138
DOI: 10.1186/s12864-018-4679-9

[…] contrary, biomass ufp did not induce any significant modulation of the analyzed proteins (data not shown).table 2gene included in next-masigpro cluster analysis: acluster 2; bcluster 9; ccluster 8;dcluster 3egsea hallmarks gene set legend: nfk tnf-α signaling via nf-kb, inf inflammatory response, xen, xenobiotic metabolism, emt, epithelial mesenchymal transitiontable 3*one way anova […]

PMCID: 5875085
PMID: 29623260
DOI: 10.3389/fcimb.2018.00089

[…] hclust (r v3.4.3)., phylogeographic interpolation was performed with the r package phylin (tarroso et al., ). calculation of spatial disease clusters was performed (carried out) with the r package dcluster (hornik et al., )., a total of 120,000 questing ticks were analyzed and only 25 tick homogenates were positive for fth by pcr. this corresponds to a prevalence of ~0.02%., fourteen fth […]

PMCID: 5381056
PMID: 28376723
DOI: 10.1186/s12866-017-0996-4

[…] from air samples of 1.5 m3; dna amount determined with a nanodrop® 2000; 5 μl of extracted dna (5 ng/μl) were used in a 20 μl -hrm analysis csalmon sperm (salmon sperm) dna carrier added (10 ng) dcluster and % of confidence ± standard deviation (sd) defined with the biorad precision melt analysis software 1.2 (temse, belgium) ea sample is defined as positive for a specific species, […]

PMCID: 4988816
PMID: 27532126
DOI: 10.1371/journal.pone.0159913

[…] each medical region was estimated using tango’s test and pearson’s chi-squared test using r version 3.2.5 (r foundation for statistical computing, vienna, austria), including the packages “spdep”, “dcluster”, and “classint” [, ]. of several methods for spatial clustering of hypothesis testing, we adopted tango’s test [] because it can analyze the presence of clustering considering geographic […]

PMCID: 4740762
PMID: 26862379
DOI: 10.5812/jjm.25502

[…] known. tm-score has the value in (0, 1), where 1 indicates a perfect match between two structures., cnumber of decoys represents the number of structural decoys that used in generating each model., dcluster density represents the density of cluster., the pgem-b2-gn plasmid was successfully amplified in e. coli top10. transformed e. coli top10 produced colonies in lb agar, containing 2 […]


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Dcluster institution(s)
SISSA (Scuola Internazionale Superiore di Studi Avanzati), Trieste, Italy

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