Dataset features

Specifications


Application: DNA methylation array analysis, Gene expression microarray analysis
Number of samples: 15
Release date: Jan 28 2008
Last update date: Jan 18 2013
Access: Public
Genes: STAT3, POU5F1, NANOG, SOX2
Taxon: Homo sapiens, Mus musculus
Dataset link Mapping Promoter CpG Methylation in mESCs

Experimental Protocol


We compared DNA methylation patterns in Wildtype (J1) and DNA methylation deficient (TKO) mouse ES cells. We performed 7 replicates using different passages of mouse ES cells. For gene expression analysis, we used the same cultures and performed 3 replicates. The supplied table is the average log ratio for the 3 replicates and takes into account the dye swap of replicate 2.

Repositories


GEO

GSE9172

BioProject

PRJNA102733

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Contact


Yin Shen