Dataset features

Specifications


Application: RNA-seq analysis
Number of samples: 6
Release date: Apr 1 2017
Last update date: Jul 5 2017
Access: Public
Diseases: Infection
Chemicals: Oxygen
Computational protocol: Geneious, DESeq2, Primer Express, TopGO
Dataset link Analysis of the in planta Transcriptome Expressed by the Corn Pathogen Pantoea stewartii subsp. stewartii via RNA-Seq

Experimental Protocol


Duplicate samples of wild-type P. stewartii were obtained for RNA-Seq after a 10 day in planta corn infection, pre-inoculum liquid culture in RM medium, and a high cell density plate culture

Repositories


GEO

GSE87520

ENA

SRP090690

BioProject

PRJNA345005

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Contact


Holly Packard

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