DDBJ statistics

Tool stats & trends

Looking to identify usage trends or leading experts?

Protocols

DDBJ specifications

Information


Unique identifier OMICS_01644
Name DDBJ
Alternative name DNA Data Bank of Japan
Restrictions to use None
Community driven No
Data access File download, Browse
User data submission Allowed
Version 1.0
Maintained Yes
Wikipedia https://en.wikipedia.org/wiki/DNA_Data_Bank_of_Japan

Taxon


  • Primates
    • Homo sapiens

Publications for DNA Data Bank of Japan

library_books

DNA Data Bank of Japan

2017 Nucleic Acids Res
PMCID: 5210514
PMID: 27924010
DOI: 10.1093/nar/gkw1001
library_books

DDBJ progress report

2011 Nucleic Acids Res
PMCID: 3013661
PMID: 21062814
DOI: 10.1093/nar/gkq1041

DDBJ citations

 (1308)
library_books

Auxin decreases chromatin accessibility through the TIR1/AFBs auxin signaling pathway in proliferative cells

2018
Sci Rep
PMCID: 5958073
PMID: 29773913
DOI: 10.1038/s41598-018-25963-y

[…] idopsis reference (TAIR10) by bowtie 1.2.1 with the following parameters: ‘-all -best -strata’ (Table ). The number of reads mapped to each reference was counted. The sequencing data are deposited at DDBJ (accession number DRA005751). […]

library_books

Comparative whole genome re sequencing analysis in upland New Rice for Africa: insights into the breeding history and respective genome compositions

2018
PMCID: 5953909
PMID: 29766351
DOI: 10.1186/s12284-018-0224-3

[…] ftware version 0.33 (Bolger et al. ) with the options of ‘LEADING:15, TRAINLING:15, SLIDINGWINDOW:4:15, MINLEN:20’ to trim adapter and low-quality sequences. The raw sequencing data were deposited to DDBJ Sequencing Read Archive (accession number: DRA006795). […]

library_books

Epizootic Hemorrhagic Disease Virus Serotype 6 Infection in Cattle, Japan, 2015

2018
PMCID: 5938786
PMID: 29664367
DOI: 10.3201/eid2405.171859

[…] uence identities between EHDV HG-1/E/15 and the other EHDV isolates were calculated with GENETYX version 10 (GENETYX Corporation, Tokyo, Japan). The results of the phylogenetic analysis of segment 2 (DDBJ accession no. LC320035) revealed that HG-1/E/15 clustered with EHDV-6 (, panel A) and showed highest identity to EHDV-6 AUS1981/07 CSIRO 753 (89.68% nucleotide and 93.51% amino acid identities). […]

library_books

Comparative transcriptomic analysis identifies genes responsible for fruit count and oil yield in the oil tea plant Camellia chekiangoleosa

2018
Sci Rep
PMCID: 5923238
PMID: 29703942
DOI: 10.1038/s41598-018-24073-z

[…] gments per kilobase length per million reads (FPKM) expression level. The sequences of the RNA-seq reads and assembled unigenes were deposited and are publicly available at the Short Read Archive and DDBJ/ENA/GenBank under the BioProject accession numbers PRJNA415233 and GFZM00000000, respectively. The version described in this report is version GFZM02000000. […]

library_books

Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species

2018
PLoS Biol
PMCID: 5916493
PMID: 29689044
DOI: 10.1371/journal.pbio.2004830

[…] h no or low divergence are assembled as a single contig with 2-fold coverage relative to separately assembled regions. Further assembly metrics are provided in . All assemblies have been submitted to DDBJ/ENA/GenBank under the project accession ID PRJEB23547.Genome metrics for A. ricciae, R. macrura, and R. magnacalcarata reference assemblies are shown in , alongside those for the published assemb […]

call_split

Streptomyces luridus So3.2 from Antarctic soil as a novel producer of compounds with bioemulsification potential

2018
PLoS One
PMCID: 5912782
PMID: 29684071
DOI: 10.1371/journal.pone.0196054
call_split See protocol

[…] t and an ABI 3730XL DNA Sequencer (Applied Biosystems) by Macrogen (Korea). The nearest taxonomic group was identified by 16S rDNA nucleotide sequence BLASTN (http://www.ncbi.nlm.nih.gov/blast) using DDBJ/EMBL/GenBank nucleotide sequence databases.A phylogenetic tree was constructed in MEGA7 [] using the neighbor-joining method []. The bootstrap consensus inferred from 1000 replicates [] was taken […]

Citations

Looking to check out a full list of citations?

DDBJ institution(s)
DDBJ Center, National Institute of Genetics, Shizuoka, Japan; Database Center for Life Science, Chiba, Japan; National Bioscience Database Center, Japan Science and Technology Agency, Tokyo, Japan
DDBJ funding source(s)
Supported by the Ministry of Education, Culture, Sports, Science and Technology of Japan (MEXT) and Research Organization of Information and Systems (ROIS); NBDC at the Japan Science and Technology Agency (JST); and by JST CREST [JPMJCR1501], Japan.

DDBJ reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review DDBJ