dDocent specifications

Information


Unique identifier OMICS_14821
Name dDocent
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Input format FASTQ
Output format VCF,BAM,FASTA,TSV
Operating system Unix/Linux, Mac OS
Programming languages Perl, Shell (Bash)
License MIT License
Computer skills Advanced
Version 2.2.25
Stability Stable
Requirements CMake, FreeBayes, vcflib, Trimmomatic, mawk, bwa, samtools, VCFtools, Rainbow, gnuplot, seqtk, cd-hit, bedtools, bamtools, GNU-parallel, PEAR read merger, Java
Maintained Yes

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Versioning


Add your version

Documentation


Maintainer


  • person_outline Jonathan Puritz <>

Additional information


http://ddocent.com/UserGuide/ http://ddocent.com/blog/

Publication for dDocent

dDocent institution(s)
Marine Genomics Laboratory, Harte Research Institute, Texas A&M University-Corpus Christi, Corpus Christi, TX, USA
dDocent funding source(s)
Supported by the National Marine Fisheries Service under Saltonstall-Kennedy Award NA10NMF4270199, by the MARFIN Award NA12NMF4330093, and by the Cooperative Research Program Award NA12NMF4540082.

dDocent review

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Calvi Caswara

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Desktop
works fine, is quite fast and easy to install, good documentation