DDRAGE specifications

Information


Unique identifier OMICS_24815
Name ddRAD Dataset Generator
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data The number of loci and individuals, a barcodes file, and the remaining partial adapter sequences.
Output data The simulated reads in a pair of files, a ground truth file describing the simulated events, a file listing the barcodes used in the dataset, and dataset statistics.
Output format FASTQ+YAML+PDF+TXT
Operating system Unix/Linux
Programming languages Python
License MIT License
Computer skills Advanced
Stability Stable
Requirements numba, numpy, matplotlib, pyyaml, scipy, sphinx, bokeh
Maintained Yes

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Maintainers


  • person_outline Sven Rahmann <>
  • person_outline Henning Timm <>

Additional information


https://ddrage.readthedocs.io/en/latest/

DDRAGE article

DDRAGE institution(s)
Genome Informatics, Institute of Human Genetics, University of Duisburg-Essen, University Hospital Essen, Essen, Germany; Aquatic Ecosystem Research, Faculty of Biology, University of Duisburg-Essen, Essen, Germany
DDRAGE funding source(s)
Supported by the German Research Foundation (DFG), Collaborative Research Center SFB 876, project C1, and from the Mercator Research Center Ruhr (MERCUR), project Pe-2013-0012 (UA Ruhr professorship).

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