DNApi specifications

Unique identifier:
OMICS_13264
Software type:
Package/Module
Restrictions to use:
None
Input format:
FASTQ,stdin
Output format:
FASTA, SAM
Programming languages:
Python
Computer skills:
Advanced
Stability:
Stable
Name:
De Novo Adapter prediction iterative algorithm
Interface:
Command line interface
Input data:
A small RNA sequence.
Output data:
The predicted 3´ adapter sequence, cleansed small RNA sequence.
Operating system:
Unix/Linux
License:
MIT License
Version:
1.1
Maintained:
Yes
  • Animals
    • Homo sapiens

versioning

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DNApi distribution

download

DNApi support

Documentation

Maintainer

  • Zhiping Weng <>

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Credits

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Publications

Institution(s)

Program in Bioinformatics and Integrative Biology, University of Massachusetts Medical School, Worcester, MA, USA

Funding source(s)

Partly supported by the National Institutes of Health grants R01 NS073947 (Epigenetic Markers in Huntington Disease Brain) and P01 HD078253 (Small Silencing RNA Function in Genome Maintenance and Gamete Development).

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