De novo ChIP sequencing data analysis bioinformatics software tools
The ability to perform de novo-based analysis of ChIP-Seq data opens the door to several possibilities. These include: (1) comparison of binding motifs for mutated versus wild-type transcription factors; and (2) motif evolution analysis in developmental studies, for species that…
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denovochipseq
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denovochipseq

A computational pipeline to extract the transcription factor binding motifs…

A computational pipeline to extract the transcription factor binding motifs from ChIP-seq data, assuming no reference genome is available. denovochipseq combines de novo assembly with statistical…

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