EULER-GA Euler Genome Assembler
Manages reads in highly repetitive regions. EULER-GA uses repeats as a fragment…
Manages reads in highly repetitive regions. EULER-GA uses repeats as a fragment assembly tool for DNA sequences.
De novo genome sequencing involves sequencing a novel genome for the first time, and requires specialized assembly of sequencing reads. The low cost and increasing availability of NGS data have driven a growing interest in software tools for de novo genome sequencing analysis. Numerous draft genomes have already been constructed (Li et al., 2010; Al-Dous et al., 2011; Jex et al., 2011; Murchison et al., 2012).
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Manages reads in highly repetitive regions. EULER-GA uses repeats as a fragment…
Manages reads in highly repetitive regions. EULER-GA uses repeats as a fragment assembly tool for DNA sequences.
Manages assembly projects of bacterial genomes with Next Generation Sequencing…
Manages assembly projects of bacterial genomes with Next Generation Sequencing (NGS) platforms. SIMBA is composed of three parts: (i) projects is a module which permits to administer sequencing…
Quantifies evidence for structural variation in genomic regions suspected of…
Quantifies evidence for structural variation in genomic regions suspected of harboring rearrangements. SV-STAT extends existing methods by adjusting a chimeric read’s support of a structural…
Assembles reads obtained with new sequencing technologies (Illumina, 454,…
Assembles reads obtained with new sequencing technologies (Illumina, 454, SOLiD) using MPI 2.2. Ray allows to reduce the number of contigs and the number of errors. It can serve as a basis to develop…
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