Main logo
?
tutorial arrow
×
Submit new tools
Share tools covering the current topic. Provide easy-to-follow guidelines to improve their usability.
Share new tools with the community
Sign up for free to promote the availability of bioinformatics tools

De novo network enrichment software tools | Pathway analysis

De novo network enrichment approaches have become increasingly popular. Although existing approaches differ in many relevant aspects (optimization criteria, algorithmic implementation, scoring function, etc.), they all aim for extracting connected…
KeyPathwayMiner…
Desktop
Web

KeyPathwayMinerWeb

The first online platform for de novo pathway enrichment analysis directly in…

The first online platform for de novo pathway enrichment analysis directly in the browser. Given a biological interaction network (e.g. protein-protein interactions) and a series of molecular…

jActiveModules
Desktop

jActiveModules

Finds clusters where member nodes show significant changes in expression…

Finds clusters where member nodes show significant changes in expression levels. jActiveModules is a plugin that searches a molecular interaction network to find expression activated subnetworks.…

HotNet
Desktop
Web

HotNet

A general algorithm for identifying high weight subnetworks in a…

A general algorithm for identifying high weight subnetworks in a vertex-weighted network. HotNet was developed for identifying significantly mutated groups of interacting genes from large cancer…

GiGA
Desktop

GiGA Graph-based iterative Group Analysis

A fast and flexible delimitation of the most interesting areas in a microarray…

A fast and flexible delimitation of the most interesting areas in a microarray experiment. GiGA identifies all relevant physiological processes, puts them into context, summarizes them in an…

BioNet
Desktop

BioNet

A comprehensive R-package for the analysis of biological networks including an…

A comprehensive R-package for the analysis of biological networks including an exact and a heuristic approach to identify functional modules. The BioNet package provides an extensive framework for…

DEGAS
Desktop

DEGAS DysrEgulated Gene set Analysis via Subnetworks

A method for identifying connected gene subnetworks significantly enriched for…

A method for identifying connected gene subnetworks significantly enriched for genes that are dysregulated in specimens of a disease. DEGAS was applied to seven human diseases and obtained…

Information

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.