DE pipeline

DE specifications

Information


Unique identifier OMICS_23730
Name DE
Alternative name DISCOVERY ENVIRONMENT
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Registration required Yes
Maintained Yes

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Documentation


Maintainer


  • person_outline DE Team <>

Additional information


http://www.cyverse.org/learning-center/discovery-environment/de-001-discovery-environment-quick-start https://pods.iplantcollaborative.org/wiki/display/DEmanual/Table+of+Contents

DE citation

2014
PMCID: 4022496

[…] the influence from alignment and genotype-calling errors. they were partitioned into ∼2-mb blocks and argweaver was applied to these blocks in parallel using the extreme science and engineering discovery environment (xsede). for this analysis, we assumed generations, , and , implying . we allowed for variation across loci in mutation and recombination rates. for each ∼2-mb block, […]

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