DEF specifications

Unique identifier:
OMICS_13368
Interface:
Web user interface
Input data:
Model file, Metabolites dictionary, Reaction mapping, External reactions, Organism proteome sequence
Output data:
Metabolites flow into and out of the introduced compartment through exchange reactions, and reactions essential for maximum flux for the production/consumption of certain dead end metabolite.
Computer skills:
Basic
Maintained:
Yes
Name:
Dead-End Filler
Restrictions to use:
None
Input format:
XML, TXT, FSA
Output format:
Reactants, Flux, Reaction, Products, Boolean_in_Draft
Stability:
Stable

DEF support

Maintainer

  • Ming Chen <>

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Publications

Institution(s)

Department of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou, China; Department of Bioinformatics, University of California, Los Angeles, Los Angeles, CA, USA

Funding source(s)

This work was supported in part by the National Natural Sciences Foundation of China (No. 31571366, 31371328), Science Technology Department of Zhejiang Province (No. 2015C32057), the Fundamental Research Funds for the Central Universities, Jiangsu Collaborative Innovation Center for Modern Crop Production and the Program for Innovative Research Team in Zhejiang University.

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