DEApp statistics
DEApp specifications
Information
| Unique identifier | OMICS_15524 |
|---|---|
| Name | DEApp |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | Two files are required as input data for this application, the ‘Raw Count Data’ and ‘Meta-data Table’. The ‘Raw Count Data’ contains summarized count results of all samples in the experiment, and the ‘Meta-data Table’ contains summarized experimental design information for each sample. |
| Programming languages | R |
| License | GNU General Public License version 2.0 |
| Computer skills | Basic |
| Stability | Stable |
| Requirements |
R shiny, R::shiny, edgeR, limma, DESeq2
|
| Maintained | Yes |
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Maintainer
- person_outline Jorge Andrade <>
Publication for DEApp
DEApp: an interactive web interface for differential expression analysis of next generation sequence data.
DEApp citations
(2)High dimensional biological data retrieval optimization with NoSQL technology
[…] [] or custom r workflows for further analysis or visualization., table shows a typical structure of a microarray table that is used in a relational database system. this example is based on the deapp schema used in the implementation of transmart 1.1. gene_symbol, probeset_id, patient_id, trial_name correspond to basic annotation data; raw, log and zscore are probeset values []., a classic […]
Room temperature redox reaction by oxide ion migration at carbon/Gd doped CeO2 heterointerface probed by an in situ hard x ray photoemission and soft x ray absorption spectroscopies
[…] is applied to the present hebb–wagner-type asymmetric cell with the combination of reversible and bkes, the to2 - value can be estimated using the current interruption method by evaluating deopen/deapp. here, eapp and eopen are the applied bias and open-circuit voltage (ocv) measured immediately after interrupting a steady-state current, as superimposed in figure (a), showing the time […]
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