DEApp specifications

Information

Unique identifier	OMICS_15524
Name	DEApp
Interface	Web user interface
Restrictions to use	None
Input data	Two files are required as input data for this application, the ‘Raw Count Data’ and ‘Meta-data Table’. The ‘Raw Count Data’ contains summarized count results of all samples in the experiment, and the ‘Meta-data Table’ contains summarized experimental design information for each sample.
Programming languages	R
License	GNU General Public License version 2.0
Computer skills	Basic
Stability	Stable
Requirements	R shiny, R::shiny, edgeR, limma, DESeq2
Maintained	Yes

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Maintainer

Jorge Andrade <>

Publication for DEApp

DEApp: an interactive web interface for differential expression analysis of next generation sequence data.

2017 Source Code Biol Med

PMCID: 5291987

PMID: 28174599

DOI: 10.1186/s13029-017-0063-4

DEApp in publications

(2)

High dimensional biological data retrieval optimization with NoSQL technology

PMCID: 4248814

PMID: 25435347

DOI: 10.1186/1471-2164-15-S8-S3

[…] [] or custom r workflows for further analysis or visualization., table shows a typical structure of a microarray table that is used in a relational database system. this example is based on the deapp schema used in the implementation of transmart 1.1. gene_symbol, probeset_id, patient_id, trial_name correspond to basic annotation data; raw, log and zscore are probeset values []., a classic […]

Room temperature redox reaction by oxide ion migration at carbon/Gd doped CeO2 heterointerface probed by an in situ hard x ray photoemission and soft x ray absorption spectroscopies

PMCID: 5090320

PMID: 27877594

DOI: 10.1088/1468-6996/14/4/045001

[…] is applied to the present hebb–wagner-type asymmetric cell with the combination of reversible and bkes, the to2 - value can be estimated using the current interruption method by evaluating deopen/deapp. here, eapp and eopen are the applied bias and open-circuit voltage (ocv) measured immediately after interrupting a steady-state current, as superimposed in figure (a), showing the time […]

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DEApp institution(s)

Center for Research Informatics, University of Chicago, Knapp Center for Biomedical Discovery, Chicago, IL, USA

DEApp funding source(s)

This work has been supported by the Biological Sciences Division at the University of Chicago with additional funding provided by the Institute for Translational Medicine, CTSA grant number UL1TR000430 from the National Institutes of Health.

DEApp reviews

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