DEApp specifications
- Unique identifier:
- OMICS_15524
- Restrictions to use:
- None
- Programming languages:
- R
- Computer skills:
- Basic
- Requirements:
- R shiny, R::shiny, edgeR, limma, DESeq2
- Interface:
- Web user interface
- Input data:
- Two files are required as input data for this application, the ‘Raw Count Data’ and ‘Meta-data Table’. The ‘Raw Count Data’ contains summarized count results of all samples in the experiment, and the ‘Meta-data Table’ contains summarized experimental design information for each sample.
- License:
- GNU General Public License version 2.0
- Stability:
- Stable
- Maintained:
- Yes
DEApp distribution
download
DEApp support
Maintainer
- Jorge Andrade <>
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Publications
-
(Li and Andrade, 2017)
DEApp: an interactive web interface for differential expression analysis of next generation sequence data.
Source Code Biol Med.
PMID: 28174599 DOI: 10.1186/s13029-017-0063-4
Institution(s)
Center for Research Informatics, University of Chicago, Knapp Center for Biomedical Discovery, Chicago, IL, USA
Funding source(s)
This work has been supported by the Biological Sciences Division at the University of Chicago with additional funding provided by the Institute for Translational Medicine, CTSA grant number UL1TR000430 from the National Institutes of Health.
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