DEApp specifications
Information
| Unique identifier | OMICS_15524 |
|---|---|
| Name | DEApp |
| Interface | Web user interface |
| Restrictions to use | None |
| Input data | Two files are required as input data for this application, the ‘Raw Count Data’ and ‘Meta-data Table’. The ‘Raw Count Data’ contains summarized count results of all samples in the experiment, and the ‘Meta-data Table’ contains summarized experimental design information for each sample. |
| Programming languages | R |
| License | GNU General Public License version 2.0 |
| Computer skills | Basic |
| Stability | Stable |
| Requirements | R shiny, R::shiny, edgeR, limma, DESeq2 |
| Maintained | Yes |
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Maintainer
- person_outline Jorge Andrade <>
Publication for DEApp
library_books
DEApp: an interactive web interface for differential expression analysis of next generation sequence data.
2017 Source Code Biol Med
PMID: 28174599
DOI: 10.1186/s13029-017-0063-4
DEApp institution(s)
Center for Research Informatics, University of Chicago, Knapp Center for Biomedical Discovery, Chicago, IL, USA
DEApp funding source(s)
This work has been supported by the Biological Sciences Division at the University of Chicago with additional funding provided by the Institute for Translational Medicine, CTSA grant number UL1TR000430 from the National Institutes of Health.
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