DECIPHER statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DECIPHER

Tool usage distribution map

This map represents all the scientific publications referring to DECIPHER per scientific context
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Associated diseases

This word cloud represents DECIPHER usage per disease context

Popular tool citations

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DECIPHER specifications


Unique identifier OMICS_01114
Alternative name Database Enabled Code for Ideal Probe Hybridization Employing R
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

DECIPHER citation


Exploring gastric bacterial community in young pigs

PLoS One
PMCID: 5332105
PMID: 28249050
DOI: 10.1371/journal.pone.0173029
call_split See protocol

[…] ne (Maximum number of Ns: 0; Max forward primer distance: 0; Max reverse primer distance: 0; Minimum sequence length: 50), chimera checking was carried out using the tool ‘Find Chimeras’ in DECIPHER (Database Enabled Code for Ideal Probe Hybridization Employing R) []. Non-chimeric sequences were aligned by RDP Aligner and the sequence reads not covering the V6 region were eliminated. After quality […]

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