DECODE protocols

DECODE specifications


Unique identifier OMICS_09885
Alternative name Differential Co-expression and Differential Expression
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
License GNU General Public License version 2.0
Computer skills Advanced
Version 1.2
Stability Stable
Maintained Yes


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  • person_outline Benjamin Y.M. Yung <>

Publication for Differential Co-expression and Differential Expression

DECODE IN pipeline

PMCID: 4427321
PMID: 25961905
DOI: 10.1371/journal.pcbi.1004176

[…] up- or down-regulated in tumor (compared to normal tissue) also exhibit large differences in co-expression patterns in tumor (compared to normal) samples?, to explicitly test the connection between differential co-expression and differential expression, we compared the two measures for metabolic genes in brca and kirc (fig 3). we assessed differential expression using the limma voom package […]

DECODE institution(s)
Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong
DECODE funding source(s)
This work was supported by the Project of Strategic Importance funding of The Hong Kong Polytechnic University [1-ZE17].

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