Decombinator specifications
- Unique identifier:
- OMICS_00001
- Interface:
- Command line interface
- Operating system:
- Unix/Linux
- Computer skills:
- Advanced
- Stability:
- Stable
- Maintained:
- Yes
- Software type:
- Package/Module
- Restrictions to use:
- None
- Programming languages:
- Python
- Version:
- 3.1
- Requirements:
- acora, biopython, regex, python-Levenshtein
versioning
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Decombinator distribution
download
Decombinator support
Documentation
Maintainer
- Benny Chain <>
Additional information
https://innate2adaptive.github.io/Decombinator/
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Publications
-
(Thomas et al., 2013)
Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.
Bioinformatics.
PMID: 23303508 -
(Cinelli et al., 2017)
Feature selection using a one dimensional naïve Bayes' classifier increases the accuracy of support vector machine classification of CDR3 repertoires.
Bioinformatics.
PMID: 28073756 DOI: 10.1093/bioinformatics/btw771
Institution(s)
CoMPLEX Department, UCL, Gower Street, London, UK; Division of Infection and Immunity, The Cruciform Building, UCL, London, UK; Department of Immunology, Weizmann Institute of Science, Rehovot, Israel; Department of Computer Science, UCL, London, UK
Funding source(s)
Supported by the Engineering and Physical Sciences Research Council and the Medical Research Council, UK.
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