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Decombinator

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A tool for the fast, efficient analysis of T cell receptor (TcR) repertoire samples, designed to be accessible to those with no previous programming experience.

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Decombinator classification

Decombinator specifications

Software type:: Package/Module
Restrictions to use:: None
Programming languages:: Python
Stability:: Stable

Interface:: Command line interface
Operating system:: Unix/Linux
Computer skills:: Advanced
Maintained:: Yes
Issue URL:: https://github.com/uclinfectionimmunity/Decombinator/issues

Credits

Publications

Publications contributions

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(Thomas et al., 2013) Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine. Bioinformatics.
PMID: 23303508

Institution(s)

CoMPLEX Department, UCL, Gower Street, London, UK

Link to literature

Methodology

(Heather et al., 2017) High-throughput sequencing of the T-cell receptor repertoire: pitfalls and opportunities. Brief Bioinform.
PMID: 28077404

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