Protocols

DECOMP specifications

Information


Unique identifier OMICS_13684
Name DECOMP
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data List of masses (Dalton) to decompose; List of masses (non negative integer) to decompose; Alphabet
Output data Mass decomposition output.
Operating system Unix/Linux, Mac OS, Windows
Programming languages C++
Computer skills Advanced
Stability Stable
Maintained Yes

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Versioning


No version available

Maintainer


  • person_outline Anton Pervukhin

Publication for DECOMP

DECOMP citation

call_split

Digging into the low molecular weight peptidome with the OligoNet web server

2017
Sci Rep
PMCID: 5601033
PMID: 28916823
DOI: 10.1038/s41598-017-11786-w
call_split See protocol

[…] a combination(s) of user-defined amino acid. The closest related MCP can be resolved in two ways on OligoNet: i) using a recursive function written entirely in R, ii) using the third-party web server DECOMP. For the second solution, metabolomic data are first converted to the JSON format and requests to DECOMP are performed using the Rcurl library. The directed PDN is built as an igraph object bas […]

DECOMP institution(s)
Lehrstuhl Bioinformatik, Friedrich-Schiller-Universität Jena, Jena, Germany; AG Genominformatik, Technische Fakultät, UniversitÄt Bielefeld, Bielefeld, Germany
DECOMP funding source(s)
Supported by Deutsche Forschungsgemeinschaft (BO 1910/1), Alexander von Humboldt Foundation and the Bundesministerium für Bildung und Forschung.

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