decoMS2 specifications

Information


Unique identifier OMICS_06728
Name decoMS2
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for decoMS2

decoMS2 in publications

 (2)
PMCID: 5499862
PMID: 28520864
DOI: 10.1093/gigascience/gix037

[…] metabolomics analysis can also take advantage of tandem ms, particularly for compound annotation, and there are a few resources for dealing with the complexity of such experiments, such as decoms2 [], an r package for deconvoluting ms2 spectra, eliminating contaminating fragments without the need of sacrificing sensitivity in favor of sensibility by narrowing the window of isolation […]

PMCID: 4101500
PMID: 24957020
DOI: 10.3390/metabo4020142

[…] unreliable fragments due to instrument noise and high complex sample compositions, a two-part approach for performing metabolomic identifications has been proposed, and a data analysis package (decoms2) implementing the algorithms in the workflow can obtain deconvolved ms2 spectra for many biological compounds []. alternatively, the high-resolution uplc-tofmse (e represents collision […]


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decoMS2 institution(s)
Department of Chemistry, Washington University School of Medicine, St Louis, MO, USA

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