DeconSeq specifications


Unique identifier OMICS_01418
Name DeconSeq
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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DeconSeq article

DeconSeq citation

PMCID: 4428251

[…] arising from the high levels of non-bacterial dna in the adenoid biopsies. we note there are a variety of stand-alone methods available to eliminate this type of non-bacterial signal, such as deconseq [12], kraken [11] and fastq screen (babraham bioinformatics, babraham institute, uk). however, by utilising parameters in qiime, we were able to achieve an efficient removal […]

DeconSeq institution(s)
Department of Computer Science, San Diego State University, San Diego, CA, USA

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