decontam statistics

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Citations per year

Citations chart

Popular tool citations

chevron_left Sequence contamination detection chevron_right
Popular tools chart

Tool usage distribution map

Tool usage distribution map

Associated diseases

Associated diseases

decontam specifications


Unique identifier OMICS_24102
Name decontam
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A feature table describing the quantitative abundance of sequence features across samples.
Operating system Unix/Linux, Mac OS, Windows
Programming languages R
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Benjamin Callahan <>

Publication for decontam

decontam institution(s)
Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA; Department of Statistics, Stanford University, Stanford, CA, USA; Infectious Diseases Section, Veterans Affairs Palo Alto Health Care System, Palo Alto, CA, USA; Department of Population Health and Pathobiology, College of Veterinary Medicine, North Carolina State University, Raleigh, NC, USA; Department of Orofacial Sciences, University of California, San Francisco School of Dentistry, San Francisco, CA, USA
decontam funding source(s)
Supported by NIH National Institute of Dental and Craniofacial Research grant R01 DE023113 and the Stanford University.

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