DeconvolutionLab statistics

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DeconvolutionLab specifications

Information


Unique identifier OMICS_25417
Name DeconvolutionLab
Alternative name DeconvolutionLab2
Software type Application/Script, Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 2
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Daniel Sage <>
  • person_outline Laurene Donati <>
  • person_outline Ferreol Soulez <>
  • person_outline Denis Fortun <>

Publication for DeconvolutionLab

DeconvolutionLab in publications

 (20)
PMCID: 5936971
PMID: 29760697
DOI: 10.3389/fimmu.2018.00850

[…] a laser scanning confocal microscope (zeiss 780 nlo, zeiss, oberkochen, germany). confocal image deconvolution was performed in imagej using the plugins “diffraction psf 3d” for psf calculation and “deconvolutionlab” with the tikhonov–miller algorithm for 2d deconvolution ()., to assess the prophylactic impact of n. brasiliensis secreted products on experimental colitis in mice, we used […]

PMCID: 5835496
PMID: 29503438
DOI: 10.1038/s41398-018-0093-y

[…] molecular probes, eugene, or, usa) for secondary staining. samples were examined on a lsm780 confocal microscopy (carl zeiss, jena, germany). images were deconvolved using the imagej/fiji plugin deconvolutionlab using theoretical point spread functions. total nlgn3 fluorescence intensity was measured as arbitrary units in all dendritic processes with clear signal of map2 in 15 µm segments […]

PMCID: 5819432
PMID: 29358380
DOI: 10.1073/pnas.1717282115

[…] were carried out by using fiji (). fwhm values were measured by using the plugin gdsc smln after running an inverted deconvolution run for correcting for finite size of the beads using the plugin deconvolutionlab2 ()., fluorescent images of e. coli and yeast cells were acquired by using a back-illuminated em ccd with 512 × 512 16-μm pixels (andor; ixon 897), mounted on a 2.5× beam expander, […]

PMCID: 5795766
PMID: 29410780
DOI: 10.1080/20013078.2018.1428004

[…] to perform laser scanning confocal imaging on a 780 nlo microscope (zeiss). confocal image deconvolution was performed in imagej using the plugins “diffraction psf 3d” for psf calculation and “deconvolutionlab” with the richardson–lucy algorithm for 3d deconvolution and tikhonov–miller algorithm for 2d deconvolution []., the protein contents from the t. muris es products and odg fractions […]

PMCID: 5736583
PMID: 29259161
DOI: 10.1038/s41467-017-02193-w

[…] low-frequency components for flat-field correction. the transformed images were post-processed for noise reduction and voxel interpolation. all 3d images were deconvoluted with open-source software deconvolutionlab2 with theoretical point spread function (psf) based on born–wolf model generated by psf generator. both 2d and 3d images were smoothed with a gaussian filter along the x, y, and time […]


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DeconvolutionLab institution(s)
Biomedical Imaging Group, Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland; Center for Biomedical Imaging - Signal Processing Core (CIBM-SP), Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland; BioImaging and Optics Platform, Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne, Switzerland
DeconvolutionLab funding source(s)
Supported by the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant agreement no 692726 ”GlobalBioIm: Global integrative framework for computational bio-imaging”).

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