DeDaL specifications


Unique identifier OMICS_12731
Name DeDaL
Alternative name Data-Driven Network Layouting
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input format txt
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
License GNU Lesser General Public License version 3.0
Computer skills Medium
Stability Stable
Maintained Yes




No version available



  • person_outline Andrei Zinovyev

Publication for Data-Driven Network Layouting

DeDaL citations


Pesticides Drive Stochastic Changes in the Chemoreception and Neurotransmission System of Marine Ectoparasites

Int J Mol Sci
PMCID: 4926324
PMID: 27258252
DOI: 10.3390/ijms17060700

[…] drug treatments. Principal components analysis (PCA) and hierarchical clustering were used to determine the contribution that each mRNA had in the response to DM and AZA treatments. Particularly, the DeDaL-PCA Cytoscape plugin combines classical and advanced data dimension reduction methods with the algorithms of network layout inside the Cytoscape environment. The genetic interactions between the […]


Evidence for the Induction of Key Components of the NOTCH Signaling Pathway via Deltamethrin and Azamethiphos Treatment in the Sea Louse Caligus rogercresseyi

Int J Mol Sci
PMCID: 4881433
PMID: 27187362
DOI: 10.3390/ijms17050304

[…] rovide a fixed set of genes with high protein-protein affinity (interactome cluster nodes). Principal component analysis using the Gene Ontology package showed two-dimensional views, retrieved by the DeDaL plugin of Cytoscape [], that were used to visualize the relatedness of all RNA-seq samples. All p-values were adjusted with a false discovery rate correction for multiple testing by the Benjamin […]

DeDaL institution(s)
Institut Curie, Paris, France; INSERM U900, Paris, France; Mines Paris Tech, Fontainebleau, France
DeDaL funding source(s)
The work is supported by ITMO Cancer SysBio program, (INVADE project) and, the grant “Projet Incitatif et Collaboratif: Computational Systems Biology Approach for Cancer” from Institut Curie and by Institut National de la Santé et de la Recherche Médicale (U900 budget).

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