DEDAL statistics

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Citations per year

Number of citations per year for the bioinformatics software tool DEDAL

Tool usage distribution map

This map represents all the scientific publications referring to DEDAL per scientific context
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DEDAL specifications


Unique identifier OMICS_03685
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


No version available

Publication for DEDAL

DEDAL citations


Structural alignment of protein descriptors – a combinatorial model

BMC Bioinformatics
PMCID: 5027075
PMID: 27639380
DOI: 10.1186/s12859-016-1237-9

[…] properly constructed alignment) and structurally similar duplexes (i.e., the RMSD value computed for them cannot be greater than 3.5 Å). Such an unambiguous mapping of aligned residues is provided by DEDAL [], which is a web server designed for solving the protein structure alignment problem. This is a computationally efficient general purpose method that is driven by the structural comparison of […]


Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA

J Mol Model
PMCID: 3936136
PMID: 24481593
DOI: 10.1007/s00894-014-2067-1
call_split See protocol

[…] 6,858 protein chains. This shows how time-consuming the process is, and it is one of the main motivations for designing and developing the new methods that are reported every year, such as RAPIDO [], DEDAL [], MICAN [], CASSERT [], ClusCo [], and others [, ].On the other hand, the evolution of computer science and computer architectures has led to (and will continue to lead to) new hardware soluti […]


Binding Stoichiometry of a Recombinant Selenophosphate Synthetase with One Synonymic Substitution E197D to a Fluorescent Nucleotide Analog of ATP, TNP ATP

PMCID: 3956282
PMID: 24719756
DOI: 10.1155/2013/983565

[…] We predicted the tetramer structure of SPS with DEDAL program [] that during alignment built a tetramer consisting of two dimers that were aligned in N-termini within 55 amino acids the same as in the hexameric structure of Aquilex aeolicus []. The […]

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DEDAL institution(s)
Faculty of Physics, Department of Biophysics and CoE BioExploratorium, University of Warsaw, Warsaw, Poland

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