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DEDAL specifications


Unique identifier OMICS_03685
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for DEDAL

DEDAL citations


Parallel implementation of 3D protein structure similarity searches using a GPU and the CUDA

PMCID: 3936136
PMID: 24481593
DOI: 10.1007/s00894-014-2067-1

[…] protein chains. this shows how time-consuming the process is, and it is one of the main motivations for designing and developing the new methods that are reported every year, such as rapido [], dedal [], mican [], cassert [], clusco [], and others [, ]., on the other hand, the evolution of computer science and computer architectures has led to (and will continue to lead to) new hardware […]


Binding Stoichiometry of a Recombinant Selenophosphate Synthetase with One Synonymic Substitution E197D to a Fluorescent Nucleotide Analog of ATP, TNP ATP

PMCID: 3956282
PMID: 24719756
DOI: 10.1155/2013/983565

[…] in the n-terminus at 14–21; the other is in the c-terminus. it is likely, 1 molecule of tnp-atp/atp binds to each of the proposed active sites., we predicted the tetramer structure of sps with dedal program [] that during alignment built a tetramer consisting of two dimers that were aligned in n-termini within 55 amino acids the same as in the hexameric structure of aquilex aeolicus []. […]

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DEDAL institution(s)
Faculty of Physics, Department of Biophysics and CoE BioExploratorium, University of Warsaw, Warsaw, Poland

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