Tool stats & trends
Looking to identify usage trends or leading experts?
|Alternative name||Drosophila melanogaster Exon Database|
|Restrictions to use||None|
- Drosophila melanogaster
Publication for Drosophila melanogaster Exon Database
C. elegans SUP 46, an HNRNPM family RNA binding protein that prevents paternally mediated epigenetic sterility
[…] expressed. To examine alternative splicing, transcripts in the WS220 version of WormBase were classified into different types of alternative splicing events using two different methodologies, namely DEDB (http://proline.bic.nus.edu.sg/dedb/methodology.html) and SpliceTrap (http://rulai.cshl.edu/splicetrap/). Information on the classes of alternative splicing events and the classification process […]
Involvement of PARP1 in the regulation of alternative splicing
[…] cbcb.umd.edu/software/GeneSplicer); Splice Site Prediction by Neural Network (http://www.fruitfly.org/seq_tools/splice.html); NNSPLICE 0.9 version (http://www.fruitfly.org/seq_tools/splice.html); and Drosophila Melanogaster Exon Database (http://proline.bic.nus.edu.sg/dedb/cgi-bin/viewer.py?id=13068). I n silico PCR program, http://genome.ucsc.edu/index.html?org=Human&db=hg18&hgsid=142437216 was […]
Molecular evolution of Drosophila Sex lethal and related sex determining genes
[…] the Mafft software (v6.624 beta)  using the E-INS-i option with default parameters. Exon boundaries were checked for the Drosophila species using the Jalview visualization software (v11)  and the DEDB database . Before proceeding with selection analyses, all positions containing indels were removed from the alignment. Complete alignments are provided in the Additional Files accompanying this […]
Comprehensive splicing graph analysis of alternative splicing patterns in chicken, compared to human and mouse
[…] s as nodes, interconnected by introns as edges, with paths through the splicing graph representing the transcripts. Such a schema was applied to the Drosophila melanogaster genome , to generate the DEDB data resource. Here, the first transcript served as a reference sequence to generate splicing graphs, with automatic rule-based classification of splicing events. The use of exons and introns as […]
Looking to check out a full list of citations?
Be the first to review DEDB