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deDoc specifications

Information


Unique identifier OMICS_32265
Name deDoc
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Java
Computer skills Advanced
Version 1.0.0
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Zhihua Zhang

Publication for deDoc

deDoc citation

library_books

From structure to function, how bioinformatics help to reveal functions of our genomes

2017
Genome Biol
PMCID: 5613474
PMID: 28950915
DOI: 10.1186/s13059-017-1320-1

[…] r for visualizing and annotating Hi-C data from human primary tissues and cell lines. Zhihua Zhang (Beijing Institute of Genomics, CAS, China) described Delta, a new 3D genome visualization tool, and DeDoc, a new method for calling topologically associated domains by merging and combining structural coding trees. Notably, DeDoc can stably detect topologically associated domains with just a few pie […]


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deDoc institution(s)
State Key Laboratory of Software Development Environment, School of Computer Science, Beihang University, Beijing, China; State Key Laboratory of Computer Science, Institute of Software, Chinese Academy of Sciences, Beijing, China; School of Computer Science, University of Chinese Academy of Sciences, Beijing, China; CAS Key Laboratory of Genome Sciences and Information, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China; School of Life Science, University of Chinese Academy of Sciences, Beijing, China; School of Mathematics, University of Chinese Academy of Sciences, Beijing, China; School of Physics, University of Chinese Academy of Sciences, Beijing, China
deDoc funding source(s)
Supported by grants from the National Basic Research program of China [grant number 2014CB340302 and 2014CB542002], the National Nature Science Foundation of China [grant number 91540114, 31671342, 31741078 and 61772503], and Special Program for Applied Research on Super Computation of the NSFC-Guangdong Joint Fund (the second phase).

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