DeepAlign specifications

Unique identifier:
OMICS_03689
Interface:
Web user interface
Input format:
PDB
Stability:
Stable
Software type:
Application/Script
Restrictions to use:
None
Computer skills:
Basic
Maintained:
Yes

DeepAlign specifications

Unique identifier:
OMICS_03689
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Maintained:
Yes
Restrictions to use:
None
Programming languages:
C, C++
Version:
1.2
Source code URL:
https://codeload.github.com/realbigws/DeepAlign/tar.gz/v1.135-2

versioning

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DeepAlign distribution

download

DeepAlign support

Maintainer

  • Sheng Wang <>
  • Sheng Wang <>

forum

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Credits

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Publications

Institution(s)

Provides automatic protein structure alignment. DeepAlign uses amino acid and local substructure substitution matrices, which are derived from evolutionarily-related protein pairs, and generate alignments highly consistent with manually-curated alignments. The interest of this method lies in its scoring function, which considering not only 3D geometric similarity, but also evolutionary information at the sequence and local substructure levels as well as hydrogen bonding similarity.

Funding source(s)

Supported by the National Institutes of Health grant R01GM089753, the National Science Foundation grant DBI-0960390 and the National Science Foundation CAREER award CCF-1149811.

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