DeepBound specifications

Unique identifier:
OMICS_17371
Interface:
Command line interface
Input data:
A read alignment file.
Output data:
Predicted boundaries.
Operating system:
Unix/Linux
Computer skills:
Advanced
Stability:
Stable
Software type:
Framework/Library
Restrictions to use:
None
Input format:
BAM
Output format:
FASTA
Programming languages:
C++
Version:
0.1
Maintained:
Yes

versioning

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DeepBound distribution

download

DeepBound support

Maintainers

  • Sheng Wang <>
  • Sheng Wang <>

forum

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Credits

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Publications

Institution(s)

Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA; School of Medicine, University of California San Diego, La Jolla, CA, USA; Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia

Funding source(s)

This work was supported by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative Grant GBMF4554, the US National Science Foundation Grants CCF-1256087 and CCF-1319998, the US National Institutes of Health Grant R01HG007104, the US National Institutes of Health Grant R01GM089753 and the US National Science Foundation Grant DBI-1564955.

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