DeepBound specifications


Unique identifier OMICS_17371
Name DeepBound
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Input data A read alignment file.
Input format BAM
Output data Predicted boundaries.
Output format FASTA
Operating system Unix/Linux
Programming languages C++
Computer skills Advanced
Version 0.1
Stability Stable
Maintained Yes



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  • person_outline Sheng Wang <>
  • person_outline Sheng Wang <>

Publication for DeepBound

DeepBound institution(s)
Department of Computational Biology, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA; School of Medicine, University of California San Diego, La Jolla, CA, USA; Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering (CEMSE) Division, King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia
DeepBound funding source(s)
This work was supported by the Gordon and Betty Moore Foundation’s Data-Driven Discovery Initiative Grant GBMF4554, the US National Science Foundation Grants CCF-1256087 and CCF-1319998, the US National Institutes of Health Grant R01HG007104, the US National Institutes of Health Grant R01GM089753 and the US National Science Foundation Grant DBI-1564955.

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