DeepChrome statistics

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Citations per year

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Popular tool citations

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Associated diseases

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DeepChrome specifications

Information


Unique identifier OMICS_16603
Name DeepChrome
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Source code URL https://codeload.github.com/QData/DeepChrome/zip/master
Maintained Yes

Documentation


Maintainer


  • person_outline Yanjun Qi <>

Information


Unique identifier OMICS_16603
Name DeepChrome
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS, Windows
Programming languages Lua
Computer skills Advanced
Stability Stable
Source code URL https://codeload.github.com/QData/DeepChrome/zip/master
Maintained Yes

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Documentation


Maintainer


  • person_outline Yanjun Qi <>

Publication for DeepChrome

DeepChrome in publication

PMCID: 5938574
PMID: 29618526
DOI: 10.1098/rsif.2017.0387

[…] would have increased if not for computational restrictions., epigenomic data, combined with deep learning, may have sufficient explanatory power to infer gene expression. for instance, the deepchrome cnn [] improved the prediction accuracy of high or low gene expression from histone modifications over existing methods. attentivechrome [] added a deep attention model to further enhance […]


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DeepChrome institution(s)
Department of Computer Science, University of Virginia, Charlottesville, VA, USA

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