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DeepGO

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Predicts protein function from protein sequences and known interactions. DeepGO is a method that improves performance of function prediction over a BLAST baseline, and performs particularly well in predicting cellular locations of proteins.

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DeepGO forum

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DeepGO classification

DeepGO specifications

Interface:
Web user interface, Application programming interface
Input data:
Some protein sequences.
Computer skills:
Basic
Maintained:
Yes
Restrictions to use:
None
Input format:
FASTA
Stability:
Stable

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DeepGO forum

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No open topic.

DeepGO classification

DeepGO specifications

Software type:
Application/Script
Restrictions to use:
None
Programming languages:
Python
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

DeepGO distribution

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DeepGO support

Documentation

Maintainer

  • Robert Hoehndorf <>
  • Robert Hoehndorf <>

Credits

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Publications

Institution(s)

Computational Bioscience Research Center, Computer, Electrical and Mathematical Sciences & Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia

Funding source(s)

Supported by funding from King Abdullah University of Science and Technology (KAUST) [FCC/1/1976-08-01].

Link to literature

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