DeepMethyl statistics

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Popular tool citations

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Tool usage distribution map

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Associated diseases

Associated diseases

DeepMethyl specifications

Information


Unique identifier OMICS_11936
Name DeepMethyl
Alternative name SdAs
Interface Web user interface
Restrictions to use None
Programming languages Python
Computer skills Basic
Stability No
Maintained No

Maintainer


This tool is not available anymore.

Publication for DeepMethyl

DeepMethyl in publications

 (2)
PMCID: 5687335
PMID: 28524769
DOI: 10.1080/15592294.2017.1329068

[…] that different methylation profiles exist not only for different tissue types but also for different diseases. wang et al. compared a standard ml approach (svm) to a dl autoencoder approach called deepmethyl using several tumor cell lines to assess cpg methylation and associated genomic topological features. results show that the dl approach can improve over svm in some cases. although using […]

PMCID: 5343954
PMID: 28212312
DOI: 10.3390/ijms18020420

[…] more than ten years ago and others did not make their dataset publicly available. here, we chose two recently published existing methods with accessible datasets for comparison, idna-methyl [] and deepmethyl []. , for comparison with idna-methyl, we downloaded its dataset (787 methylated samples and 1639 unmethylated samples) from their website (http://www.jci-bioinfo.cn/idna-methyl) […]


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DeepMethyl institution(s)
School of Computing, University of Southern Mississippi, Hattiesburg, MS, USA; Department of Computer Science and Christopher S. Bond Life Sciences Center, University of Missouri, Columbia, MO, USA; Department of Biochemistry and Molecular Biology, Georgia Regents University, Augusta, GA, USA; Department of Pharmacology and Toxicology, University of Mississippi Medical Center, North State Street, Jackson, MS, USA
DeepMethyl funding source(s)
Supported by the startup grant and a seed grant from National Science Foundation Mississippi EPSCoR (sub-award from Mississippi State University).

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