DeepNano specifications

Information


Unique identifier OMICS_14561
Name DeepNano
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Oxford Nanopore MinION reads
Output data Basecalls for template, complement and 2D into file
Output format FASTA
Biological technology Oxford Nanopore
Operating system Unix/Linux, Mac OS
Programming languages Python
Computer skills Advanced
Stability Stable
Requirements Cython, numpy, h5py, Theano, Python-dateutil
Maintained Yes

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Maintainers


  • person_outline Vladimir Boza <>
  • person_outline Tomas Vinar <>

Publication for DeepNano

DeepNano institution(s)
Faculty of Mathematics, Physics and Informatics, Comenius University, Bratislava, Slovakia
DeepNano funding source(s)
Supported by VEGA grants 1/0684/16 and 1/0719/14, and a grant from the Slovak Research and Development Agency APVV-14-0253.

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