deepnet-rbp specifications

Information


Unique identifier OMICS_10246
Name deepnet-rbp
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Jianyang Zeng

Publication for deepnet-rbp

deepnet-rbp citation

library_books

RNA protein binding motifs mining with a new hybrid deep learning based cross domain knowledge integration approach

2017
BMC Bioinformatics
PMCID: 5331642
PMID: 28245811
DOI: 10.1186/s12859-017-1561-8

[…] twork (DBN) is another deep learning algorithm to learn high-level features from large-scale data [], which is also a recent popular choice for constructing the computational models. For example, the deepnet-rbp fuses the structural and k-mer sequence features to predict RBP interaction sites [] using DBNs. DANN trains a DBN to annotate non-coding variants [], which is able to capture non-linear a […]

deepnet-rbp institution(s)
Institute for Interdisciplinary Information Sciences, Tsinghua University, Beijing, China; Department of Pharmacology and Pharmaceutical Sciences, School of Medicine, Tsinghua University, Beijing, China; School of Life Sciences, Tsinghua University, Beijing, China; MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, China; Department of Genetics, Institute for Quantitative Biomedical Sciences, Norris Cotton Cancer Center, Geisel School of Medicine at Dartmouth, Hanover, NH, USA
deepnet-rbp funding source(s)
National Basic Research Program of China [2011CBA00300, 2011CBA00301]; National Natural Science Foundation of China [61033001, 61361136003, 61472205]; China's Youth 1000-Talent Program

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